Indirect prompt injection uses untrusted retrieved content, tool outputs, or agent messages to override an LLM's intended behavior. We show that defense robustness is channel-conditioned: the same attack succeeds 18% of the time as a follow-up message but 53% when placed in retrieved context. We propose TRACER (Trace-Regularized Adversarial Channel Exposure with Reward-shaping), a channel-aware adversarial training method that samples presentation wrappers and combines an answer-anchored, evidence-gated reward with ATRC, which aligns attacked reasoning with clean evidence when an injection is invalid. On GSM8K with Qwen2.5-3B-Instruct, TRACER reduces RAG-framed ASR from 65.5% to 6.1% while preserving 78-82% clean accuracy. Joint RAG+tool training achieves 13.9% average ASR across framings at 3B scale, while a single epoch at 7B reaches 9.4%. These results demonstrate that robust defenses must explicitly train and evaluate across deployment channels.

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