While critical for alignment, Supervised Fine-Tuning (SFT) incurs the risk of catastrophic forgetting, yet the layer-wise emergence of instruction-following capabilities remains elusive. We investigate this mechanism via a comprehensive analysis utilizing information-theoretic, geometric, and optimization metrics across model scales (1B-32B). Our experiments reveal a distinct depth-dependent pattern: middle layers (20\%-80\%) are stable, whereas final layers exhibit high sensitivity. Leveraging this insight, we propose Mid-Block Efficient Tuning, which selectively updates these critical intermediate layers. Empirically, our method outperforms standard LoRA up to 10.2\% on GSM8K (OLMo2-7B) with reduced parameter overhead, demonstrating that effective alignment is architecturally localized rather than distributed. The code is publicly available at https://anonymous.4open.science/r/base_sft.

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