Recent advances in Vision-Language-Action (VLA) models point toward general-purpose robotic intelligence by unifying perception, instruction, and control. Despite impressive progress, existing VLA models often adapt poorly due to \emph{tri-modal misalignment} among vision, language, and action, which weakens action grounding and hurts generalization and fine-tuning efficiency. In this work, we present Alignment-Guided Flow Transformer (AGFT), a novel framework that explicitly enforces tri-modal alignment through a dedicated alignment loss, bridging the representational gap across modalities and enhancing task adaptation. While prior research has predominantly emphasized bi-modal vision--language alignment, we systematically formalize and study tri-modal alignment in VLA models, and provide both ablations and analysis to isolate its role in improving adaptation and robustness. To further accelerate deployment, we adopt a flow-matching objective, enabling substantially fewer inference steps than diffusion-based policies while maintaining accuracy. Theoretically, we establish a quantitative connection between the tri-modal alignment gap and the optimization tightness of flow matching; empirically, experiments on the extensive benchmark show that AGFT achieves superior success rates and lower inference latency compared to SOTA baselines, underscoring tri-modal alignment as a key ingredient for scaling robust VLA manipulation.

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