Modern learning systems represent perceptual signals with continuous vectors, but comparison, retrieval, memory, alignment, and reasoning are often naturally symbolic. In language, this interface is given by tokens; for speech and audio, it must be learned. Existing audio tokenizers use local quantization, clustering, or reconstruction, leaving sequence consistency, compactness, length control, termination, and edit geometry indirectly optimized. We introduce PairAlign, a framework for compact audio tokenization through sequence-level self-alignment. PairAlign treats tokenization as conditional sequence generation: an encoder maps speech to a condition, and an autoregressive decoder emits tokens from BOS to EOS, learning identity, order, length, and termination. Given two content-preserving views, each token string is trained to be likely under the other's representation, while unrelated examples provide competing sequences. This yields a surrogate for edit-distance preservation while discouraging collapse. Starting from a VQ tokenizer, PairAlign extends a frame-synchronous prior into an autoregressive tokenizer using VQ-derived and EMA-teacher targets, cross-paired teacher forcing, anti-bypass regularization, likelihood contrast, length control, and timing recovery. On 3 s speech, PairAlign learns compact token strings with strong cross-view consistency. In retrieval, it operates at 12.71 tokens/s and reduces archive tokens by 55% versus VQ while preserving edit-distance search. The results expose a compactness--locality trade-off: PairAlign does not aim to dominate dense geometric or SSL tokenizers on every local metric, but provides a lower-rate symbolic interface for comparison, retrieval, and analysis. More broadly, PairAlign is a sequence-symbolic analogue of JEPA-style predictive learning, predicting a learned variable-length symbolic sequence rather than a continuous latent.

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