We study unsupervised hypergraph alignment, where the goal is to infer node correspondences between two hypergraphs using only structural information, without node features, labels, seed matches, or side information. Direct higher-order formulations can represent hyperedge interactions faithfully, but they can be computationally demanding and cumbersome for non-uniform hypergraphs. Graph-reduction approaches introduce a different challenge: clique expansions keep the alignment problem on the original node set but collapse all hyperedge evidence into one pairwise graph, whereas bipartite expansions preserve incidence structure but enlarge the problem from nodes to nodes plus hyperedges. We introduce FALCON (Filtration-based hypergrAph aLignment via Cross-scale Optimal traNsport), an unsupervised optimal-transport framework for hypergraph alignment. Instead of representing each hypergraph by a single collapsed clique graph, FALCON constructs a filtration-induced sequence of clique-based co-occurrence dissimilarity matrices and jointly aligns all levels through one shared multi-scale Gromov--Wasserstein (GW) objective. The shared transport plan enforces a globally consistent node correspondence across filtration levels while avoiding the auxiliary hyperedge nodes introduced by bipartite expansion. Experiments on perturbation benchmarks derived from real-world hypergraphs show that FALCON is robust to structural noise and in almost all cases outperforms strong graph- and hypergraph-alignment baselines.

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