Effective AI adoption in cyber-physical systems (CPS) depends on embedding design knowledge into engineering practice. Yet as AI-enabled components increasingly replace analytically derived control laws, this occurs without a systematic understanding of how controller architectures differ or remain similar across paradigms. We address this gap with an empirical study of traditional and AI-enabled Simulink controllers, guided by a literature-derived taxonomy of ten structural categories and nine functional roles. The study analyzes 62 real-world models spanning 8 controller types and 10 application domains, and surveys 13 practitioners, identifying three architectural tensions. First, subsystem organization dominates all controller structures regardless of paradigm, occupying 68-72% of controller footprint, while core control logic occupies minimal space. Second, AI-enabled controllers rely heavily on discrete dynamics and user-defined abstraction, categories largely absent from AI literature, exposing a gap between described and implemented architectures. Third, constraint enforcement blocks largely disappear from AI-enabled models despite practitioner expectations. This reveals a misalignment where safety mechanisms shift from explicit structure to implicit training-time artifacts, breaking traceability.

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