Checkpoint selection can improve an electroencephalography (EEG) emotion-recognition score without improving performance on other trials. We compared selection and scoring on disjoint trial pools along fixed training trajectories. A same-session SEED study comprised 300 trajectories from 15 participants, two models and five trial-role rotations. Another 276 trajectories extended the comparison to separate training, validation and target sessions in SEED, SEED-IV and SEED-V, with 15, 15 and 16 participants, respectively. Increasing the candidate set from five to 80 checkpoints raised the same-session dynamical graph convolutional neural network (DGCNN) selection-pool score by 6.24 percentage points, while the other-pool change was -1.24 (descriptive 95% participant-bootstrap interval -2.67 to 0.26). Under the cross-session design, DGCNN retained gains of 4.47 [1.79, 7.25], 4.27 [2.00, 6.53] and 2.75 [0.79, 4.78] points across the three datasets. Multilayer perceptron results varied across datasets. Common-time-range analysis and trial-level scoring supported the respective patterns. Both target pools supplied labels for symmetric checkpoint selection; these results concern retention across trials, not evaluation without target labels. Complete policy curves and executable reconstruction support reporting selected-score improvements alongside performance on other trials, rather than assuming a universal penalty for checkpoint search.

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