Knowledge graphs (KGs) are increasingly used as structured context for Large Language Models (LLMs), but industrial KG-RAG systems often need to integrate public and domain-specific KGs constructed from heterogeneous databases. This integration relies on Entity Alignment (EA), where lexical matching alone is insufficient under predicate-name variation and incomplete local neighborhoods. We address EA for KG integration by constructing a pairwise EA dataset and proposing two complementary modules: Predicate Importance Estimation (PIE) and Decoupled Rationale-Score Distillation (DRSD). PIE is a compact embedding-based approach that removes the subject information from each 1-hop triple, encodes the resulting subjectless triples, and aggregates them with learnable predicate-importance weights to build predicate-aware entity embeddings. DRSD trains a distilled small language model (SLM) with pseudo-answers produced by a teacher LLM through distinct prompts. By converting binary EA labels into text-based supervision and decoupling confidence-score estimation from label-consistent rationales, DRSD enables the SLM to learn task-specific reasoning while retaining a less label-biased confidence signal. Experiments show that PIE and DRSD improve EA classification. Moreover, because DRSD decouples confidence-score estimation from the decision, a discrepancy between the two flags an uncertain prediction for human review, thereby enabling a practical discrepancy between automatic acceptance and human-in-the-loop verification.

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