We develop low distortion embeddings with outliers from arbitrary metrics into hierarchically separated trees (HSTs). In particular, we develop an efficient algorithm that for any $ε>0$, given an input metric $(X,d)$, and a probabilistic embedding of all but $k$ points from $X$ into HSTs with distortion $c$, samples from a probabilistic embedding of all but $O(\frac{k}ε\log k)$ points into HSTs that achieves distortion at most $(32+ε)c$. Our results are based on two key technical components. First, we extend an algorithm of Munagala et al. [2023] for minimizing the distortion of embeddings without outliers into HSTs to the setting with outliers. We combine this with new results on bi-Lipschitz extensions into trees and $\ell_1$ space. In particular, we show that any probabilistic embedding into HSTs can be extended to $k$ additional points with only a factor $O(\log k)$ of additional distortion. This bi-Lipschitz extension result utilizes a new probabilistic partitioning scheme that we call onion partitioning.

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