Automatic Text Recognition (ATR) now supplies digital humanities with large volumes of unstructured, heterogeneous, and often noisy text in ancient languages. Downstream semantic analysestext reuse identification, alignment, and semantic search-rely on sentence embeddings, yet existing methods transfer poorly to ancient languages: generic multilingual encoders underperform, specialized language models yield anisotropic representation spaces, and labeled similarity data is unavailable. We study two fully unsupervised strategies - TSDAE and contrastive sentence embedding (CSE) - that adapt a specialized token-level language model into a corpus-specific sentence encoder using only raw sentences. On the philologically central case of biblical reuse in patristic literature (2,935 expert-verified parallels in Latin and Ancient Greek, from Augustine, Jerome, and Athanasius), we decompose reuse identification into two separately evaluated tasks-binary detection and correspondence retrieval-and benchmark the adapted encoders against multilingual, specialized, distilled, and supervised fine-tuned baselines, as well as on artificially noised data simulating HTR artifacts and scribal abbreviations. The adapted encoders outperform all baselines on both tasks, with complementary profiles: TSDAE leads detection given a large in-domain corpus, while CSE leads retrieval, reaches its optimum with as few as 4-8k raw in-domain sentences-a few tens of seconds of training on a laptop GPU-and transfers across works and authors, including to noisy post-ATR text when retrained directly on it. UMAP atlases relate the geometric effect of each strategy to the measured gains, and the full pipeline-segmentation, fine-tuning, cross-corpus semantic search-is made available to non-specialists through the online tool Paraphrasis.

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