Gate-defined semiconductor quantum-dot (QD) arrays are a promising platform for quantum computing. However, their large configuration spaces and inherent measurement noise make device tuning time consuming and difficult to scale. Although machine-learning (ML) approaches for automated tuning have proliferated rapidly, a fair comparison of methods remains limited by inconsistent metrics and a lack of standardized labeled datasets. Here, we introduce Geometry-Informed ANNotator for Electrostatic Topologies (GAnnET), a physics- and geometry-informed algorithm that automatically generates probabilistic state labels for charge stability diagrams (CSDs) of double-QD systems. GAnnET constructs local geometric models of CSD structure and combines them into a global state map with calibrated confidence, eliminating the need for manual annotation. We validate GAnnET on simulated and experimental CSDs and demonstrate consistent labeling suitable for ML training and benchmarking. By enabling reproducible annotation of experimental data, GAnnET supports community benchmarking and scalable automated QD operation.

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