Despite their remarkable capabilities, large foundation models (LFMs) remain susceptible to adversarial manipulation. Current safety intervention methods primarily rely on the \textit{locality hypothesis}, rigidly suppressing isolated neurons or features. However, harmful semantics manifest as distributed, cross-layer circuits, rendering localized ablations both brittle against complex jailbreaks and detrimental to general utility. To bridge this gap, we propose TraceRouter++, a routing-level safety intervention framework that explicitly traces safety-relevant causal routing pathways activated under harmful inputs and realigns their unsafe activation states. Our framework operates in a \textit{Discover-Trace-Realign} paradigm: it first pinpoints a sensitive onset layer via attention divergence and disentangles dense activations into interpretable routing features using sparse autoencoders (SAEs). Subsequently, it maps these features to downstream causal circuits via feature influence scores (FIS). Crucially, departing from rigid suppression paradigms, TraceRouter++ introduces a constrained optimal transport (OT)-based soft routing realignment. By formulating safety intervention as a tractable coordinate-wise marginal optimal transport approximation, our method redirects unsafe activation marginals toward safe-reference marginals within causally identified routing subspaces while preserving non-selected coordinates at the intervention point. This mechanism safely redirects malicious semantic flows while leaving orthogonal computational routes intact. Extensive experiments across representative large language models (LLMs), multimodal large language models (MLLMs), and diffusion models (DMs) show that TraceRouter++ outperforms evaluated baselines, improving adversarial robustness while maintaining a favorable safety-utility trade-off. WARNING: This paper contains unsafe model responses.

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