We present a semantic-structural atlas of transportation research built from 120{,}323 papers across 34 peer-reviewed journals published between 1967 and 2025, roughly an order of magnitude larger than and a decade beyond Sun and Rahwan's~(2017) coauthorship study. We use OpenAlex and Crossref as open, CC0-licensed data sources, resolve author identity through OpenAlex author IDs, ORCID records, and manual alias resolution, and embed every paper with SPECTER2 with Arora-style whitening concatenated with concept TF--IDF and venue linear-discriminant projections. On this substrate we report three findings. First, Leiden on the author-level semantic k-nearest-neighbor graph yields 23 topic communities that agree only weakly with the 172 coauthor communities (normalized mutual information $0.23$), opening room for a predictive layer that neither source encodes alone. Second, a multiplex Leiden partition combining both edge types recovers 181 communities and localizes where collaboration and topic structure decouple. Third -- the paper's core methodological contribution -- we define \emph{phantom collaborators}, pairs of authors who are top-$K$ semantic neighbors yet $\geq 3$ hops apart in the coauthor graph, and show via a temporal hold-out (training cutoff 2019) that phantom pairs become real coauthors in 2020--2025 at a rate $16$ to $33$ times above random, popularity-weighted, and same-venue baselines, with a $68$-fold monotone gradient between the highest- and lowest-similarity buckets. All artifacts are released as a live, reproducible web atlas at https://choi-seongjin.github.io/transport-atlas/.

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