Prompt specifications for multi-agent large language model (LLM) systems carry data contracts and integration logic across interdependent files but are rarely subjected to structured-inspection rigor. We report a single-system case study of iterative, agent-driven auditing applied to AEGIS (Autonomous Engineering Governance and Intelligence System), a seven-lane production pipeline whose 7152-line specification surface was audited across nine rounds, surfacing 51 consistency defects (per-round counts of 15, 8, 12, 2, 8, 1, 4, 1, 0). We present a seven-category post hoc taxonomy with explicit coding rules, non-monotonic convergence consistent with cascading edits and audit-scope expansion, and a locked audit protocol. We further report two partial replications on a public synthetic mini-specification: a cross-LLM panel of four frontier vendors (OpenAI, Anthropic, Google, xAI; 12 traces; multi-vendor union detects all five seeded defects) and an inter-rater reliability check on a stratified subsample (Cohen's $κ$ = 0.80 on category, 0.46 on severity). The full reproducibility bundle accompanies the submission.

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