Fine-grained recognition of marine organisms is important for ecological research, biodiversity monitoring, and habitat conservation. However, existing methods often focus on the target organism alone, which can overlook informative cues from the surrounding environment. Moreover, biological taxonomy is often underused during model training, despite providing meaningful hierarchical information for distinguishing visually similar taxa. To address these limitations, we propose MATANet, a Multi-Context Attention and Taxonomy-Aware Network for ROI-guided fine-grained marine organism recognition. Inspired by expert taxonomic identification, MATANet jointly models target appearance, environmental context, and taxonomic information. Specifically, MCEAM uses the target organism representation as a query to attend to informative cues from surrounding regions. In addition, biological taxonomy is used as auxiliary supervision through level-wise taxonomic CE, encouraging predictions that are more consistent with the taxonomic hierarchy. Experiments on FathomNet 2025 and FishCLEF2015 demonstrate that MATANet consistently outperforms representative benchmark models for fine-grained marine organism recognition. The official challenge evaluation further supports the practical effectiveness of the proposed framework on held-out test data. Additional evaluations on FAIR1M v2.0 assess the transferability of MATANet to another visual recognition domain, while experiments using automatically detected ROIs examine its practical applicability and robustness in detection-based recognition settings.

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