Dense retrieval services increasingly underpin semantic search, recommendation, and retrieval-augmented generation, yet clients typically receive only a top-$k$ list with no auditable evidence of how it was produced. We present V3DB, a verifiable, versioned vector-search service that enables audit-on-demand correctness checks for approximate nearest-neighbour (ANN) retrieval executed by a potentially untrusted service provider. V3DB commits to each corpus snapshot and standardises an IVF-PQ search pipeline into a fixed-shape, five-step query semantics. Given a public snapshot commitment and a query embedding, the service returns the top-$k$ payloads and, when challenged, produces a succinct zero-knowledge proof that the output is exactly the result of executing the published semantics on the committed snapshot -- without revealing the embedding corpus or private index contents. To make proving practical, V3DB avoids costly in-circuit sorting and random access by combining multiset equality/inclusion checks with lightweight boundary conditions. Our prototype implementation based on Plonky2 achieves up to $22\times$ faster proving and up to $40\%$ lower peak memory consumption than the circuit-only baseline, with millisecond-level verification time. Github Repo at https://github.com/TabibitoQZP/zk-IVF-PQ.

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